Abstract:To address the difficulty in reliably evaluating the time-varying stability of local clock sources caused by frequency disturbances, phase drift, and missing data in multi-node application environments, such as the Industrial Internet of Things, communication networks, and distributed measurement systems, this paper studies the computation of dynamic Allan variance under missing-data conditions; a beat-frequency observation structure based on two ring oscillators is adopted to convert the frequency deviation and phase drift of the clock under test relative to a reference clock into a low-frequency count sequence; a missing-data-aware computation method combining valid Allan triplet screening with a window validity criterion is proposed to calculate local statistics using triplets composed of actual observations; comparative experiments were conducted using sequences measured on a field-programmable gate array and synthetic sequences, and the results showed that the method reduced local spurious fluctuations around missing-data blocks and improved the contrasts of both burst noise and periodic ripple compared with the block-mean rescaling method; the method can provide a highly reliable reference for monitoring clock-source synchronization states, assessing clock-source quality, and analyzing anomalous data under missing-data conditions.