Time triggered Ethernet as a new distributed switching network has the characteristics of strong real-time, high bandwidth and high security, and TTE clock synchronization is the prerequisite for constructing the TTE network. Analyzing the TTE time synchronization process and the existing noise, this paper builds a clock noise model, and get a good result using the Kalman filter filtering algorithm. Finally this paper use two progressive compensation algorithm to compensate the clock offset after removing the effect of noise, and the feasibility of the algorithm is verified by simulation.